One thing you guys have to understand is that the voting procedure for stages was broken into four phases. Phase IV, the final phase that a lot of controversial stages ended up being handled in, was months into the process and had a procedural change that resulted in lower turn-out and more "liberal" results.
So, phase 1 was just a straw poll. Any stage that overwhelmingly fell one way was that way with no discussion. This mostly just encompassed banned stages. We didn't need a thread discussing the myriad problems with New Pork City. A few stages, such as Onett, had niche support but didn't get beyond here due to how obvious it was they had very limited support.
Phase 2 handled starter stuff and resulted in what you see. It was pretty clean, and I'm not seeing many problems with the result.
Phase 3 was supposed to be the last phase. The rule was that, if you voted with the minority in phase 1, you had to justify your position or have your vote not count. It was about halfway through this phase that I personally got a lot more involved for those curious, but a pattern began to emerge. The minority positions would go to great lengths to justify themselves, and the majority would just not bother responding. The Distant Planet topic was just sad... I don't in particular blame anyone for what they did, but it was pretty obvious this was broken. This also only resulted in four stages going to solid counterpick (Rainbow Cruise, Brinstar, Frigate Orpheon, PictoChat). Every other stage you currently see in counterpick or counterpick/banned was in counterpick/banned which made it a ridiculous rule set that didn't actually recommend anything.
Thus phase 4 was born. Phase 4 required everyone to vote fresh and to give clear, non-stupid reasons for why they supported what they did with simple majority ruling. Note that it was actually pretty lax in what was "acceptable reasoning"; it pretty much just couldn't be something of the form "this stage is gay" or "this stage is obviously fair" (I can give you my absolute word there was no bias at all in vote counting). Fatigue from the long process probably drove down participation a bit, but having to actually explain yourself probably changed the participation too. A lot of members saw the arguments and said things like "I honestly can't say if this stage is fair so I'm abstaining from voting". The topics were good and well reasoned topics with a lot of discussion I should note; it wasn't just a small handful picking stuff arbitrarily.
I do hope people actually give this a shot. We put a lot of work into this list, and personally I feel that it will really help the game. Alpha Zealot has made some really strong points in this topic getting into some of the specifics as per why, but the most important thing is that real play is the only thing that can really provide results and is ultimately the most convincing thing. The Meta Knight fear mongering is nothing more than an assertion without evidence, and I sincerely hope more than anything that some of you guys put your money where your mouth is, hold tournaments with this rule set, use Meta Knight, and show us all how right you are.
Seriously, if you like limited rule sets, you should be cheering at this list. This is your opportunity to play on all these stages, abuse what you "know" is broken, and shut some of us up once and for all while making some money on the side. I would consider myself a scientifically minded individual, and believe me, I would love nothing more than for you guys to take this list and prove how bad it is by real play. My hypothesis is that you won't be able to, but as a scientist wanting his hypothesis tested and as an ardent supporter of a playing to win philosophy, I want nothing more than for some of you to try to prove otherwise. Extra credit if you capture some videos of the tournament play you have that proves how broken these stages really are.